Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024767.1 Corchorus olitorius cultivar O-4 contig24800, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47489

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
810--848
19
2.1
19
95
0
69
33
20
25
20
1.97
878--905
2
14.0
2
100
0
56
50
0
0
50
1.00
4144--4194
24
2.2
23
85
3
66
37
0
3
58
1.16
17764--17825
30
2.1
30
96
0
115
46
14
22
16
1.83
18254--18278
2
12.5
2
100
0
50
48
0
0
52
1.00
23935--24030
29
3.2
29
76
7
86
39
28
11
20
1.87
24458--24537
29
2.7
30
76
5
90
20
12
27
40
1.88
25110--25158
21
2.5
20
83
6
55
61
6
4
28
1.38
25752--25776
12
2.1
12
100
0
50
48
16
12
24
1.79
26315--26355
19
2.1
19
90
4
64
17
7
17
58
1.60
27987--28389
213
1.9
214
94
1
711
25
11
17
45
1.82
28989--29025
19
1.9
19
100
0
74
48
5
10
35
1.61

Tables:   1

The End!