Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024769.1 Corchorus olitorius cultivar O-4 contig24802, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39316

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2518--2556
14
2.6
14
84
8
51
74
2
5
17
1.12
3752--3805
14
3.8
15
85
4
60
81
9
1
7
0.94
3768--3801
16
2.1
16
88
0
50
85
5
0
8
0.75
3998--4048
24
2.1
25
85
3
68
70
5
5
17
1.28
8653--8685
16
2.0
17
88
5
50
36
3
0
60
1.12
10747--10789
22
2.0
22
81
9
52
16
9
11
62
1.53
20095--20148
19
2.6
21
77
19
60
38
18
3
38
1.69
23894--23937
21
2.1
21
87
8
63
29
31
9
29
1.88
34456--34579
66
1.9
66
88
3
187
24
25
22
28
2.00
35807--35833
14
1.9
14
100
0
54
22
33
14
29
1.94
36964--37048
23
3.9
21
86
6
98
43
5
15
35
1.71
36928--37048
43
2.7
44
80
8
104
46
7
15
30
1.74
36977--37048
23
3.2
23
92
3
112
40
6
15
37
1.74
37084--37144
22
2.8
22
87
5
79
45
9
6
37
1.63
37313--37342
15
1.9
16
93
6
53
10
0
40
50
1.36
37949--37986
11
3.5
11
85
10
51
57
2
0
39
1.12
39085--39122
11
3.5
11
85
10
51
57
2
0
39
1.12

Tables:   1

The End!