Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024770.1 Corchorus olitorius cultivar O-4 contig24803, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26634

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
172--209
11
3.5
11
85
10
51
57
2
0
39
1.12
527--587
31
2.1
31
84
9
83
32
1
9
55
1.42
7404--7520
31
3.5
31
68
28
94
23
13
20
42
1.87
7376--7527
72
2.1
73
96
1
279
22
11
20
45
1.83
7386--7499
36
3.2
36
64
30
89
21
10
21
45
1.82
7712--7777
31
2.1
31
88
5
98
33
13
18
34
1.90
11772--11825
20
2.6
21
79
8
65
31
31
3
33
1.75
12715--12783
32
2.2
31
84
7
86
31
2
21
43
1.67
14521--14555
10
3.4
11
84
15
56
37
0
0
62
0.95
15042--15187
78
1.9
78
94
0
256
15
11
32
40
1.83
16102--16147
21
2.3
21
85
7
60
13
2
10
73
1.17
20479--20519
3
13.7
3
100
0
82
65
0
34
0
0.93
22500--22538
3
13.3
3
94
5
71
33
0
0
66
0.92
22491--22538
17
2.9
16
88
11
71
33
0
0
66
0.92
22491--22536
20
2.3
20
89
10
76
32
0
0
67
0.91

Tables:   1

The End!