Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024775.1 Corchorus olitorius cultivar O-4 contig24808, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55341

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7974--9896
332
5.9
327
78
6
1720
36
15
14
32
1.88
18912--18983
30
2.4
31
82
13
89
23
20
12
43
1.86
19037--19099
33
1.9
33
96
0
117
34
28
20
15
1.94
19037--19121
33
2.6
32
87
9
111
29
29
23
17
1.97
19159--19236
29
2.6
30
87
2
113
42
14
25
17
1.87
20141--20170
13
2.3
13
94
0
51
23
20
0
56
1.42
20170--20208
5
7.4
5
88
11
60
41
17
0
41
1.50
20170--20208
17
2.4
16
91
8
62
41
17
0
41
1.50
20165--20215
15
3.6
15
75
24
65
41
17
0
41
1.50
24032--24125
33
2.9
33
90
1
145
22
28
21
27
1.99
32116--32187
21
3.3
21
83
7
81
29
12
6
51
1.65
32448--32626
86
2.1
86
94
1
313
32
11
6
48
1.66
32616--32668
22
2.5
22
76
11
56
28
9
13
49
1.73
32688--32731
20
2.1
21
88
12
65
31
6
11
50
1.65
32707--32757
23
2.2
23
79
6
59
27
7
13
50
1.69
33331--33385
21
2.6
21
82
0
74
30
9
10
49
1.69
34560--34639
12
7.0
12
70
11
60
27
45
23
3
1.70
34595--34633
6
6.8
6
85
8
55
20
51
28
0
1.48
34595--34633
11
3.5
11
86
6
60
20
51
28
0
1.48
34584--34639
23
2.4
23
81
0
67
25
46
25
3
1.69
35466--35553
32
2.8
32
85
0
122
35
38
15
10
1.82
35466--35553
16
5.5
15
72
10
68
35
38
15
10
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36090--36126
1
37.0
1
94
0
65
97
0
0
2
0.18
39267--39321
21
2.6
21
82
0
65
16
21
47
14
1.82
41664--41701
19
2.0
19
89
0
58
28
15
7
47
1.74
41678--41732
25
2.2
24
90
3
83
38
16
5
40
1.72
41678--41732
24
2.2
24
87
3
74
38
16
5
40
1.72
43907--43946
2
18.5
2
90
10
53
2
45
5
47
1.38
47550--47609
15
4.1
14
76
21
61
48
3
1
46
1.28
47553--47591
17
2.4
16
87
8
53
56
5
0
38
1.22
47553--47617
15
4.4
14
76
20
53
53
3
3
40
1.32
47563--47618
28
2.0
28
82
6
69
51
3
3
41
1.36
47974--48018
14
3.0
16
78
15
51
53
4
0
42
1.21
47974--48017
15
3.0
14
83
6
52
52
4
0
43
1.22
53543--53584
2
21.0
2
95
0
75
0
47
0
52
1.00
55303--55341
3
13.0
3
100
0
78
66
0
0
33
0.92

Tables:   1

The End!