Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024776.1 Corchorus olitorius cultivar O-4 contig24809, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7968

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1228--1257
15
2.1
14
93
6
51
66
6
6
20
1.38
3614--3725
22
5.2
22
72
15
65
33
16
8
40
1.80
3686--3771
45
1.9
45
83
4
111
38
16
11
33
1.85
3633--3802
22
7.7
22
71
11
105
37
17
11
34
1.85
3843--4647
22
36.3
22
66
16
227
35
16
9
39
1.81
4238--4286
21
2.3
21
82
6
64
38
12
6
42
1.67
4211--4376
67
2.5
66
74
5
156
33
12
10
42
1.78
4686--4786
46
2.2
44
82
6
114
36
13
8
40
1.76
4738--4864
66
1.9
66
86
0
182
36
18
9
36
1.83
4664--4861
22
8.9
22
71
9
134
38
16
9
35
1.81
6540--6589
17
2.9
17
84
0
64
50
0
6
44
1.26
6985--7017
3
11.0
3
100
0
66
0
0
33
66
0.92

Tables:   1

The End!