Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024778.1 Corchorus olitorius cultivar O-4 contig24811, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8400

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5743--6016
22
12.5
22
70
12
152
38
10
17
33
1.85
5743--6196
44
10.5
43
72
13
184
37
11
17
33
1.86
5873--5908
12
2.9
12
87
4
54
55
5
16
22
1.62
5927--6009
43
1.9
43
87
4
123
34
9
19
36
1.84
5941--6093
78
2.0
77
82
8
186
34
11
19
34
1.87
6019--6238
22
9.9
22
74
7
176
37
12
16
33
1.87
6066--6194
69
1.9
69
88
3
197
37
12
16
34
1.86
6017--6218
69
3.0
68
79
9
175
37
12
17
32
1.88
6904--7095
22
8.8
22
73
5
147
38
8
15
37
1.79
6904--7095
44
4.4
44
74
3
172
38
8
15
37
1.79
6904--7093
66
2.9
66
82
0
229
37
8
15
37
1.79
7490--7591
22
4.6
22
77
13
102
34
10
16
38
1.84
7509--7592
44
1.9
44
85
9
118
35
9
16
38
1.81
7509--7606
44
2.2
44
82
10
112
39
8
15
36
1.77
7610--8043
22
19.0
24
71
18
142
41
10
15
32
1.81
7646--7712
23
3.0
23
73
8
75
44
7
11
35
1.70
7621--7854
121
1.9
121
83
7
305
41
9
14
33
1.79
7749--7920
91
1.9
90
87
4
256
41
12
13
31
1.83
7742--8155
22
19.0
22
74
11
291
39
9
16
34
1.82
7743--8068
131
2.4
134
82
7
335
39
11
15
33
1.84
7840--8148
131
2.4
125
80
10
306
39
8
16
35
1.79
8175--8216
20
2.1
20
95
0
75
26
16
7
50
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8208--8286
22
3.6
22
81
6
81
37
15
7
39
1.76

Tables:   1

The End!