Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024779.1 Corchorus olitorius cultivar O-4 contig24812, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29206

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
153--220
31
2.2
31
84
5
84
29
17
19
33
1.95
247--320
31
2.4
31
97
0
139
35
16
20
28
1.94
302--357
29
1.9
29
82
7
69
33
5
19
41
1.74
7852--7914
22
3.0
22
95
4
112
33
4
22
39
1.75
8992--9136
31
4.7
31
81
1
166
35
24
22
16
1.95
8992--9161
61
2.8
60
76
7
173
35
25
22
16
1.94
10128--10162
11
3.2
11
91
0
61
0
2
17
80
0.84
20518--20572
28
2.0
28
85
7
76
41
9
14
34
1.77
22941--23133
30
6.5
30
89
2
264
27
23
20
28
1.99
23155--23219
27
2.4
27
94
0
103
38
16
16
27
1.91
27321--27373
24
2.3
21
81
12
52
50
5
20
22
1.69
27963--28022
19
3.3
19
67
9
52
36
8
13
41
1.74
28385--28419
18
1.9
18
94
0
61
51
11
8
28
1.67
28547--28578
16
2.0
16
93
0
55
46
0
0
53
1.00
28547--28594
18
2.5
19
83
10
62
52
0
0
47
1.00
28620--28694
35
2.1
35
95
0
132
42
18
16
22
1.88
29163--29206
2
22.0
2
100
0
88
50
0
0
50
1.00

Tables:   1

The End!