Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024783.1 Corchorus olitorius cultivar O-4 contig24816, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47743

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
496--537
20
2.1
20
95
0
75
57
0
11
30
1.35
1475--1513
14
2.9
13
80
3
51
53
2
2
41
1.28
1499--1749
119
2.0
121
87
9
362
49
1
10
37
1.49
4928--4963
18
1.9
19
88
5
56
58
8
0
33
1.28
5321--5380
32
1.9
31
86
3
84
11
36
35
16
1.85
13048--13086
3
13.0
3
100
0
78
0
33
0
66
0.92
25380--25606
22
10.8
22
71
14
108
38
14
9
37
1.78
25780--25824
22
2.0
22
91
0
72
46
13
6
33
1.69
26056--26175
43
2.8
44
78
10
120
35
16
8
40
1.79
25945--26228
22
12.8
22
71
10
141
35
16
8
39
1.80
26126--26220
49
2.0
48
85
2
127
34
14
7
43
1.74
26181--26293
43
2.6
43
76
13
108
38
15
7
38
1.77
26259--26359
22
4.6
22
80
6
107
42
17
8
30
1.80
30650--30721
30
2.4
31
88
4
96
30
19
11
38
1.86
35120--35179
30
2.0
30
100
0
120
30
20
13
36
1.90
39141--39191
26
2.0
26
92
0
84
49
7
13
29
1.70
39713--39764
21
2.5
20
84
6
68
48
9
3
38
1.54
39820--39861
4
10.5
4
100
0
84
73
0
0
26
0.83
46759--46788
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!