Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024785.1 Corchorus olitorius cultivar O-4 contig24818, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4173
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27


Found at i:1523 original size:51 final size:51

Alignment explanation


    Indices: 1426--1523  Score: 119
    Period size: 51  Copynumber: 1.9  Consensus size: 51

       1416 ATCAAATTCT

                                                 * **          
       1426 CCTTGTTTAGATCTTGTCTCAGGACAAACAAACACTCTTTTAGTGTTTTTC
          1 CCTTGTTTAGATCTTGTCTCAGGACAAACAAACACTCGTACAGTGTTTTTC

                                 *     *                     
       1477 CCTTGTTTCA-ATCTTGTCTCCGGACATACAAACACT-GTACACGTGTT
          1 CCTTGTTT-AGATCTTGTCTCAGGACAAACAAACACTCGTACA-GTGTT

       1524 CTTCATTTAG


Statistics
Matches: 40,  Mismatches: 5, Indels: 4
        0.82            0.10        0.08

Matches are distributed among these distances:
  50    2  0.05
  51   37  0.93
  52    1  0.03

ACGTcount: A:0.23, C:0.24, G:0.14, T:0.38


Consensus pattern (51 bp):   
CCTTGTTTAGATCTTGTCTCAGGACAAACAAACACTCGTACAGTGTTTTTC

Found at i:2111 original size:151 final size:151

Alignment explanation


    Indices: 1837--2157  Score: 588
    Period size: 151  Copynumber: 2.1  Consensus size: 151

       1827 ATTTTTGGCG

                               *   *                    *                    
       1837 CAACATCTCTTTTTGGCACTCCCGGTGGGACACAGCAAGATCCTGTCTTCTCAACTCGGCGTCTC
          1 CAACATCTCTTTTTGGCACACCCAGTGGGACACAGCAAGATCCTATCTTCTCAACTCGGCGTCTC

                                                                             
       1902 CATAAGCTTTCTCTCTCTCAAAGTCGGCGATCCCCGACTCTCTTATCAATTTTCCGTGCTACGTT
         66 CATAAGCTTTCTCTCTCTCAAAGTCGGCGATCCCCGACTCTCTTATCAATTTTCCGTGCTACGTT

                                 
       1967 GGACTGCCCACTCGCCCGCAC
        131 GGACTGCCCACTCGCCCGCAC

                                             *                               
       1988 CAACATCTCTTTTTGGCACACCCAGTGGGACACTGCAAGATCCTATCTTCTCAACTCGGCGTCTC
          1 CAACATCTCTTTTTGGCACACCCAGTGGGACACAGCAAGATCCTATCTTCTCAACTCGGCGTCTC

                                                                         *   
       2053 CATAAGCTTTCTCTCTCTCAAAGTCGGCGATCCCCGACTCTCTTATCAATTTTCCGTGCTATGTT
         66 CATAAGCTTTCTCTCTCTCAAAGTCGGCGATCCCCGACTCTCTTATCAATTTTCCGTGCTACGTT

                          *      
       2118 GGACTGCCCACTCGGCCGCAC
        131 GGACTGCCCACTCGCCCGCAC

                               
       2139 CAACATCTCTTTTTGGCAC
          1 CAACATCTCTTTTTGGCAC

       2158 GCCTGATGGG


Statistics
Matches: 164,  Mismatches: 6, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
 151  164  1.00

ACGTcount: A:0.19, C:0.35, G:0.17, T:0.29


Consensus pattern (151 bp):   
CAACATCTCTTTTTGGCACACCCAGTGGGACACAGCAAGATCCTATCTTCTCAACTCGGCGTCTC
CATAAGCTTTCTCTCTCTCAAAGTCGGCGATCCCCGACTCTCTTATCAATTTTCCGTGCTACGTT
GGACTGCCCACTCGCCCGCAC

Done.