Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024787.1 Corchorus olitorius cultivar O-4 contig24820, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42143

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4084--4110
2
13.5
2
100
0
54
48
0
0
51
1.00
7466--7522
21
2.7
21
78
10
62
38
17
19
24
1.93
7592--7649
22
2.6
22
80
0
71
53
5
5
36
1.46
12931--12963
17
2.0
16
94
5
57
42
6
18
33
1.75
13414--13440
13
2.1
13
100
0
54
29
14
7
48
1.71
15770--15824
24
2.3
23
84
9
74
12
9
21
56
1.64
16457--16500
7
6.0
7
82
10
52
59
15
2
22
1.48
16457--16503
16
3.0
16
75
15
53
59
14
4
21
1.52
16503--16585
28
3.2
28
62
19
70
33
14
13
38
1.85
16506--16728
52
4.4
51
86
5
317
32
15
16
35
1.90
16506--16728
102
2.2
102
91
1
367
32
15
16
35
1.90
22296--22327
2
16.0
2
100
0
64
50
0
0
50
1.00
23068--23281
106
2.0
106
99
0
419
39
19
10
29
1.86
29990--30203
107
2.0
108
95
0
385
42
7
10
40
1.67
35859--35931
36
2.0
36
100
0
146
27
10
21
39
1.87
37119--37168
15
3.0
19
71
28
51
24
0
14
62
1.32
37765--37846
41
2.0
41
88
4
121
28
13
18
40
1.88
37845--37881
13
2.8
13
87
0
56
32
8
43
16
1.77
38499--38635
43
3.2
42
87
6
195
34
5
21
38
1.77
41234--41381
22
6.8
22
74
13
103
40
12
8
39
1.72
41234--41404
22
7.9
21
73
13
91
38
12
7
41
1.72

Tables:   1

The End!