Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024789.1 Corchorus olitorius cultivar O-4 contig24822, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106336

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3680--3718
14
2.8
14
88
7
53
64
2
10
23
1.37
3815--3877
31
2.0
31
90
0
99
41
6
20
31
1.77
4050--4386
55
6.3
54
69
11
169
24
11
24
40
1.87
4138--4196
21
2.9
19
85
10
64
15
15
25
44
1.85
4082--4224
76
1.9
75
84
4
189
22
11
25
41
1.86
4350--4407
21
2.8
21
86
5
73
15
17
25
41
1.89
4392--4462
33
2.1
34
81
5
81
25
8
22
43
1.81
4425--4822
57
7.2
55
68
14
192
26
10
21
41
1.85
4049--4872
220
3.8
220
90
3
1139
25
11
22
40
1.87
4653--4808
55
2.8
55
79
10
138
30
10
16
42
1.83
5800--5830
6
5.0
6
92
7
53
3
16
0
80
0.83
10445--10491
21
2.2
22
84
3
60
34
21
6
38
1.79
11542--11652
54
2.1
54
94
5
199
60
5
10
23
1.50
11727--11752
1
26.0
1
100
0
52
0
0
0
100
0.00
19418--19442
11
2.3
11
100
0
50
48
8
16
28
1.74
19985--20020
17
2.1
17
94
0
63
30
8
19
41
1.81
23346--23439
36
2.6
36
86
3
109
35
23
25
15
1.95
24196--24510
81
3.9
81
95
0
533
34
14
29
21
1.93
25081--25112
16
2.0
16
100
0
64
37
6
31
25
1.81
37277--37309
2
16.5
2
100
0
66
48
0
0
51
1.00
37971--38002
12
2.7
12
95
0
55
31
21
18
28
1.97
44857--44996
76
1.9
73
84
11
185
38
9
17
34
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46347--46550
50
4.1
50
91
3
304
29
15
17
37
1.91
53021--53202
99
1.8
99
83
2
240
34
20
19
25
1.97
55474--55650
88
2.0
88
97
0
336
20
17
23
37
1.94
66573--66606
13
2.8
12
91
8
52
0
17
0
82
0.67
69053--69187
67
2.0
67
88
2
200
25
22
15
36
1.94
74374--74400
11
2.5
11
100
0
54
33
0
11
55
1.35
76402--76461
19
3.0
20
75
7
68
28
20
13
38
1.90
92367--92396
2
15.0
2
100
0
60
50
0
0
50
1.00
98813--98866
27
1.9
29
85
7
76
35
3
0
61
1.14
101113--101181
34
2.0
34
91
0
111
23
23
11
42
1.86
104336--104402
34
2.0
34
96
0
125
41
19
14
23
1.89

Tables:   1

The End!