Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024795.1 Corchorus olitorius cultivar O-4 contig24828, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3464
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.31


Found at i:894 original size:21 final size:21

Alignment explanation


    Indices: 854--905  Score: 59
    Period size: 21  Copynumber: 2.5  Consensus size: 21

        844 CCCATTGCCG

                     *  *        
        854 TGCCACCACTGGTTAAGCCCA
          1 TGCCACCACCGGCTAAGCCCA

                           *    *
        875 TGCCACCACCGGCTATGCCCG
          1 TGCCACCACCGGCTAAGCCCA

                 *    
        896 TGCCATCACC
          1 TGCCACCACC

        906 ATTCAGTGCC


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.19, C:0.44, G:0.19, T:0.17


Consensus pattern (21 bp):   
TGCCACCACCGGCTAAGCCCA

Found at i:3411 original size:11 final size:11

Alignment explanation


    Indices: 3395--3420  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

       3385 AGATAATTTC

                       
       3395 TTTTCTTCTAG
          1 TTTTCTTCTAG

                       
       3406 TTTTCTTCTAG
          1 TTTTCTTCTAG

                
       3417 TTTT
          1 TTTT

       3421 TAGGCAAAGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69


Consensus pattern (11 bp):   
TTTTCTTCTAG
Done.