Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024798.1 Corchorus olitorius cultivar O-4 contig24831, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27207

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1008
439
2.3
434
82
5
1169
41
13
14
30
1.84
1--1121
439
2.6
437
80
6
1094
42
12
14
30
1.84
1793--1868
38
2.0
38
84
2
100
30
23
14
31
1.94
2507--2549
15
2.9
15
82
0
50
55
0
4
39
1.20
2883--3006
62
2.0
62
90
6
198
22
15
17
44
1.86
3999--4080
41
2.0
42
90
2
130
36
6
18
39
1.75
4961--5550
296
2.0
293
91
1
946
24
16
17
41
1.89
6829--6919
42
2.2
42
92
2
148
32
4
20
41
1.72
12230--12470
36
6.8
36
76
2
209
37
26
17
18
1.93
12228--12483
35
7.2
35
76
2
233
37
25
17
18
1.93
12228--12470
71
3.4
71
91
1
380
37
26
17
18
1.92
12450--12509
25
2.3
26
80
5
68
38
16
23
21
1.93
14245--14286
21
2.0
21
90
9
68
38
23
11
26
1.90
15140--15221
41
2.0
41
88
4
121
26
7
10
54
1.61
20246--20286
2
20.5
2
100
0
82
51
0
0
48
1.00
26713--26755
5
9.0
5
97
2
72
0
0
16
83
0.64
27175--27207
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!