Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024799.1 Corchorus olitorius cultivar O-4 contig24832, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55405

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
506--542
19
2.0
19
94
5
67
67
0
0
32
0.91
5308--5338
13
2.4
13
94
0
53
22
0
12
64
1.27
15868--15906
2
20.0
2
94
5
71
48
0
0
51
1.00
18394--18431
2
19.0
2
100
0
76
50
0
0
50
1.00
23883--24024
49
3.0
47
85
9
180
51
6
14
27
1.67
28319--28574
128
2.0
128
97
0
485
27
22
18
31
1.97
31587--31950
125
2.9
125
96
0
647
34
18
16
30
1.93
31909--31981
32
2.3
32
87
0
101
27
20
24
27
1.99
31784--32106
157
2.1
157
95
0
576
32
18
18
30
1.95
31659--32231
281
2.0
282
97
0
1094
34
18
17
30
1.93
31941--32399
125
3.7
125
94
0
787
35
17
15
31
1.92
31587--32356
406
1.9
407
96
0
1416
34
17
16
31
1.93
32509--32565
28
2.1
26
87
6
78
26
22
5
45
1.73
37591--37695
48
2.2
48
86
3
151
22
17
5
54
1.64
38554--38601
22
2.2
21
85
14
62
37
14
29
18
1.91
52671--52717
23
2.0
23
100
0
94
25
12
21
40
1.89
52769--52873
48
2.2
48
84
3
142
23
17
4
54
1.62
54341--54370
2
15.5
2
93
6
53
50
0
0
50
1.00
54725--55252
211
2.5
213
94
3
918
41
12
10
35
1.77

Tables:   1

The End!