Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024800.1 Corchorus olitorius cultivar O-4 contig24833, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18166
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:5238 original size:61 final size:61

Alignment explanation


    Indices: 5168--5287  Score: 204
    Period size: 61  Copynumber: 2.0  Consensus size: 61

       5158 ATGATGTTTG

                      *                    *    *       *                
       5168 GATATATAGAGATTTATTCTGATTATAATGAGATTTTACATGTATTTACTAAAAAAAATTA
          1 GATATATAGAAATTTATTCTGATTATAATGAAATTTCACATGTACTTACTAAAAAAAATTA

                                                                       
       5229 GATATATAGAAATTTATTCTGATTATAATGAAATTTCACATGTACTTACTAAAAAAAAT
          1 GATATATAGAAATTTATTCTGATTATAATGAAATTTCACATGTACTTACTAAAAAAAAT

       5288 ATCAATATTT


Statistics
Matches: 55,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  61   55  1.00

ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39


Consensus pattern (61 bp):   
GATATATAGAAATTTATTCTGATTATAATGAAATTTCACATGTACTTACTAAAAAAAATTA

Found at i:18105 original size:2 final size:2

Alignment explanation


    Indices: 18100--18125  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

      18090 CATATATGTG

                                                  
      18100 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA

      18126 AACATGGGCC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.