Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024801.1 Corchorus olitorius cultivar O-4 contig24834, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42991

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
163--239
3
25.7
3
97
0
145
64
0
1
33
1.01
465--682
109
2.0
109
96
0
400
44
14
11
30
1.79
5228--5254
2
13.5
2
100
0
54
51
0
0
48
1.00
7323--7350
2
14.0
2
100
0
56
50
0
0
50
1.00
10821--10870
21
2.4
21
89
0
73
44
22
22
12
1.85
11153--11938
390
2.0
391
94
0
1367
32
17
23
26
1.97
12080--12129
23
2.2
23
82
7
57
16
24
2
58
1.49
17908--17932
4
6.2
4
100
0
50
76
24
0
0
0.80
23536--23561
10
2.6
10
100
0
52
92
7
0
0
0.39
24256--24304
22
2.2
22
88
0
71
32
20
14
32
1.92
28205--28247
23
2.0
21
81
9
50
48
16
30
4
1.66
30237--30273
3
12.3
3
100
0
74
32
0
0
67
0.91
30743--30779
18
2.1
18
89
0
56
27
40
8
24
1.83
34645--35007
179
2.0
180
93
0
620
30
12
30
26
1.92
39562--39664
53
2.0
52
83
7
129
33
20
28
17
1.95
41044--41077
2
17.0
2
100
0
68
50
0
0
50
1.00
41119--41212
45
2.2
42
84
7
118
38
19
5
37
1.74
42340--42376
19
1.9
19
88
0
56
24
16
21
37
1.93
42567--42600
4
8.8
4
87
6
52
0
23
0
76
0.79
42566--42602
11
3.3
11
88
7
56
0
21
0
78
0.75

Tables:   1

The End!