Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024802.1 Corchorus olitorius cultivar O-4 contig24835, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47868

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4183--4240
19
2.9
19
82
5
71
32
18
12
36
1.88
5490--5555
34
1.9
34
84
0
87
36
4
19
39
1.72
5522--5732
22
9.7
22
72
9
121
36
9
18
36
1.82
5573--5646
21
3.5
21
75
12
71
31
13
17
37
1.89
5942--6040
42
2.3
43
82
5
110
37
12
13
37
1.81
5980--6082
22
4.6
23
73
16
83
35
9
13
40
1.78
5980--6082
45
2.3
46
83
6
122
35
9
13
40
1.78
6904--7057
76
2.0
76
100
0
308
49
14
9
27
1.73
13295--13711
208
2.0
208
97
0
789
24
21
20
33
1.97
13953--14270
159
2.0
159
99
0
627
35
16
14
34
1.89
14296--14393
31
3.2
31
72
16
114
26
18
21
33
1.96
14777--14846
36
1.9
36
91
0
113
60
8
10
21
1.55
17963--18006
22
2.0
22
95
0
79
47
6
9
36
1.62
36081--36230
51
3.1
50
61
24
113
44
13
16
26
1.84
36078--36264
94
2.0
95
96
1
349
45
13
15
25
1.83
40422--40448
9
3.0
9
100
0
54
0
11
0
88
0.50
42170--42203
14
2.4
14
85
0
50
32
5
17
44
1.73
46131--46162
15
2.1
15
100
0
64
25
18
12
43
1.85
46437--46672
120
2.0
121
93
1
411
37
16
11
34
1.85

Tables:   1

The End!