Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024806.1 Corchorus olitorius cultivar O-4 contig24839, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22704

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1336--1371
19
1.9
18
88
5
54
41
8
22
27
1.82
3720--3758
2
20.0
2
94
5
71
48
0
0
51
1.00
5898--6287
145
2.8
141
88
6
560
30
20
16
33
1.94
6417--6828
40
10.4
40
88
2
447
30
20
10
38
1.86
6417--6802
121
3.2
121
83
4
455
29
20
10
39
1.86
6341--6858
40
13.1
38
82
6
225
29
21
11
38
1.88
6530--6871
79
4.3
78
82
4
206
30
21
11
36
1.89
10694--10740
20
2.3
20
92
7
78
59
27
8
4
1.45
11042--11082
15
2.5
15
88
11
55
56
4
17
21
1.60
11042--11082
16
2.4
18
80
15
52
56
4
17
21
1.60
12073--12144
26
2.7
29
83
16
109
16
13
25
44
1.85
15616--15656
17
2.4
18
80
12
50
73
9
9
7
1.26
17491--17557
28
2.4
28
94
0
116
22
34
26
16
1.95
18189--18232
19
2.3
19
84
0
52
38
11
2
47
1.52

Tables:   1

The End!