Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024811.1 Corchorus olitorius cultivar O-4 contig24844, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5597

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
150--223
28
2.7
27
93
6
123
43
29
13
13
1.82
2000--2098
27
3.7
27
90
0
135
38
26
19
16
1.92
2399--2793
50
7.8
50
89
2
547
28
12
27
31
1.93
3407--3544
51
2.7
50
87
2
204
29
13
20
36
1.91
4123--4204
23
3.5
22
74
14
76
14
2
15
67
1.34
4121--4204
22
3.7
23
73
22
86
14
2
15
67
1.33
4122--4164
17
2.6
17
92
3
70
13
0
18
67
1.23
4122--4204
5
16.6
5
73
21
50
14
2
15
67
1.33
4150--4207
13
4.2
13
72
10
53
13
3
12
70
1.28
4610--4658
15
3.3
15
80
5
55
10
10
0
79
0.93
5137--5162
9
2.9
9
100
0
52
30
0
23
46
1.53

Tables:   1

The End!