Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024813.1 Corchorus olitorius cultivar O-4 contig24846, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4814
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30


Found at i:249 original size:69 final size:69

Alignment explanation


    Indices: 154--383  Score: 354
    Period size: 69  Copynumber: 3.3  Consensus size: 69

        144 ATTTCCCGCA

                *   *                                                        
        154 ACAACTCCTGGACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGTAATTTGCGCTCCTCAA
          1 ACAAGTCCGGGACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGTAATTTGCGCTCCTCAA

                
        219 CAGC
         66 CAGC

                                          *                             *    
        223 ACAAGTCCGGGACAGGACTTGGGTAACTCCCGCCCAGGTCTTGTCCTGTAATTTGCGCTCTTCAA
          1 ACAAGTCCGGGACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGTAATTTGCGCTCCTCAA

                
        288 CAGC
         66 CAGC

                                                               *     **      
        292 ACAAGTCCGGGACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGTATTTTTGCATTCCTCA
          1 ACAAGTCCGGGACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGTA-ATTTGCGCTCCTCA

                 
        357 ACAG-
         65 ACAGC

                    **             
        361 ACCAAGTCTTGGACAGGACTTGG
          1 A-CAAGTCCGGGACAGGACTTGG

        384 CCAAGATCTG


Statistics
Matches: 148,  Mismatches: 11, Indels: 3
        0.91            0.07        0.02

Matches are distributed among these distances:
  69  115  0.78
  70   33  0.22

ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26


Consensus pattern (69 bp):   
ACAAGTCCGGGACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGTAATTTGCGCTCCTCAA
CAGC
Done.