Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002482.1 Corchorus olitorius cultivar O-4 contig02482, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 776

Length: 1294
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35


Found at i:218 original size:35 final size:35

Alignment explanation


    Indices: 174--281  Score: 189
    Period size: 35  Copynumber: 3.1  Consensus size: 35

        164 ACACTGTCGT

                *                              
        174 TTTGTCTAAGTCTCTTTTCTTCCTAACACTTAAAA
          1 TTTGCCTAAGTCTCTTTTCTTCCTAACACTTAAAA

                                               
        209 TTTGCCTAAGTCTCTTTTCTTCCTAACACTTAAAA
          1 TTTGCCTAAGTCTCTTTTCTTCCTAACACTTAAAA

                 *       *                     
        244 TTTGCATAAGTCTTTTTTCTTCCTAACACTTAAAA
          1 TTTGCCTAAGTCTCTTTTCTTCCTAACACTTAAAA

               
        279 TTT
          1 TTT

        282 TTTTTCTCTC


Statistics
Matches: 70,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  35   70  1.00

ACGTcount: A:0.26, C:0.22, G:0.06, T:0.46


Consensus pattern (35 bp):   
TTTGCCTAAGTCTCTTTTCTTCCTAACACTTAAAA
Done.