Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024820.1 Corchorus olitorius cultivar O-4 contig24853, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16703
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:16191 original size:58 final size:58

Alignment explanation


    Indices: 16096--16210  Score: 160
    Period size: 58  Copynumber: 2.0  Consensus size: 58

      16086 ATTAATCAAA

                                                          *           
      16096 TATCAAGTGACATGTTCTTCATTAGATGCATAAAAAAAGACGTTTTCGGACCAAGACT
          1 TATCAAGTGACATGTTCTTCATTAGATGCATAAAAAAAGACGTTTTAGGACCAAGACT

                *            *  *         *                      *    
      16154 TATCGAGTGACATGTTTTTTTATTAGATGCCT-AAAAAAGACGTTTTAGGACCGAGAC
          1 TATCAAGTGACATG-TTCTTCATTAGATGCATAAAAAAAGACGTTTTAGGACCAAGAC

      16211 ATGATGCTAT


Statistics
Matches: 50,  Mismatches: 6, Indels: 2
        0.86            0.10        0.03

Matches are distributed among these distances:
  58   36  0.72
  59   14  0.28

ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31


Consensus pattern (58 bp):   
TATCAAGTGACATGTTCTTCATTAGATGCATAAAAAAAGACGTTTTAGGACCAAGACT
Done.