Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024824.1 Corchorus olitorius cultivar O-4 contig24857, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6896
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:3625 original size:13 final size:13

Alignment explanation


    Indices: 3607--3631  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       3597 TTTGCCAAAA

                         
       3607 AATAATTTTAAGC
          1 AATAATTTTAAGC

                        
       3620 AATAATTTTAAG
          1 AATAATTTTAAG

       3632 GTGGTAAAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40


Consensus pattern (13 bp):   
AATAATTTTAAGC

Found at i:3894 original size:21 final size:21

Alignment explanation


    Indices: 3870--3912  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3860 GCACCAAGGT

                                 
       3870 GGCCTACTGTCCAGTCGAGTG
          1 GGCCTACTGTCCAGTCGAGTG

                                 
       3891 GGCCTACTGTCCAGTCGAGTG
          1 GGCCTACTGTCCAGTCGAGTG

             
       3912 G
          1 G

       3913 TGTGCTTGGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.14, C:0.28, G:0.35, T:0.23


Consensus pattern (21 bp):   
GGCCTACTGTCCAGTCGAGTG
Done.