Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024825.1 Corchorus olitorius cultivar O-4 contig24858, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99589

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16868--16946
40
2.0
40
100
0
158
22
15
20
41
1.89
20139--20169
15
2.1
15
93
0
53
32
29
12
25
1.93
21163--21189
1
27.0
1
100
0
54
100
0
0
0
0.00
22514--22539
13
2.0
13
100
0
52
23
23
15
38
1.92
30926--30987
27
2.3
27
94
2
108
51
4
11
32
1.59
35009--35039
9
3.4
9
95
0
53
22
6
38
32
1.80
36605--36811
103
2.0
103
92
0
342
35
19
10
34
1.87
41399--41445
21
2.3
20
82
7
58
36
10
23
29
1.89
48524--48563
20
2.0
20
100
0
80
45
0
25
30
1.54
61070--61109
15
2.6
16
88
4
55
62
12
10
15
1.54
77033--77058
3
8.7
3
100
0
52
30
0
34
34
1.58
79965--79990
13
2.0
13
100
0
52
15
38
0
46
1.46
88065--88120
28
2.0
29
89
3
87
37
16
26
19
1.92
88065--88140
29
2.6
28
83
4
80
40
17
23
18
1.91
89944--90071
51
2.5
51
92
0
211
40
11
21
25
1.87
98860--99003
76
1.9
76
83
8
186
17
30
29
22
1.97

Tables:   1

The End!