Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024838.1 Corchorus olitorius cultivar O-4 contig24871, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27188

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--201
47
4.7
40
74
16
186
35
18
29
16
1.93
27--203
47
4.0
45
78
14
204
38
18
26
16
1.92
10--202
87
2.2
87
93
0
323
37
17
28
16
1.91
4729--4797
20
3.4
20
67
25
63
47
18
11
21
1.80
4707--4797
41
2.3
41
94
3
159
48
18
12
20
1.80
4756--4970
108
2.0
107
97
0
403
36
18
16
28
1.93
5101--5172
27
2.7
27
86
0
81
44
27
11
16
1.82
5639--5668
8
3.6
8
95
4
51
10
13
0
76
1.01
9672--10105
54
8.0
54
82
4
459
32
22
17
27
1.96
10071--10659
35
16.8
35
85
2
714
41
18
13
26
1.88
10071--10947
105
8.5
104
83
5
1007
40
18
13
26
1.88
10569--10748
91
2.0
89
90
2
279
42
19
12
26
1.86
10658--10959
35
8.6
35
84
3
385
39
19
14
27
1.90
10509--10960
161
2.7
165
84
7
553
40
19
13
26
1.89
10476--10855
196
1.9
196
86
0
544
40
18
13
27
1.88
10440--10880
231
1.9
231
92
0
747
40
18
13
27
1.88
10949--11148
54
3.7
54
87
4
269
35
19
16
29
1.93
10949--11148
108
1.8
109
88
3
305
35
19
16
29
1.93
16303--16369
34
2.0
34
90
0
107
41
13
19
25
1.88
16352--16410
31
1.9
31
92
0
100
32
18
28
20
1.96
16381--16497
39
3.0
38
86
5
153
35
17
20
26
1.95

Tables:   1

The End!