Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024842.1 Corchorus olitorius cultivar O-4 contig24875, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78882

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4624--4663
15
2.6
16
88
4
55
15
10
12
62
1.54
8344--8420
27
2.9
27
94
0
127
36
24
20
18
1.95
9067--9235
65
2.6
65
87
3
234
26
23
12
37
1.90
9225--9395
67
2.6
67
91
0
270
27
24
11
36
1.90
11694--11729
18
2.0
18
100
0
72
44
22
11
22
1.84
11940--11991
27
1.9
27
88
0
77
34
26
21
17
1.95
12651--12752
27
3.8
27
85
6
145
17
21
26
34
1.96
12651--12752
52
1.9
54
90
6
163
17
21
26
34
1.96
20173--20204
15
2.1
15
94
0
55
37
12
34
15
1.85
23174--23217
18
2.4
18
76
0
52
50
0
0
50
1.00
23176--23221
21
2.1
22
92
4
76
45
0
0
54
0.99
28410--28443
18
1.9
17
88
5
50
29
11
8
50
1.69
30379--30423
9
5.0
9
86
0
54
22
66
6
4
1.33
30377--30416
21
1.9
21
94
0
71
20
67
7
5
1.34
30382--30423
12
3.5
12
86
0
57
23
66
4
4
1.30
30385--30419
18
1.9
18
94
0
61
20
68
5
5
1.31
36752--36786
4
9.2
4
93
6
56
80
0
20
0
0.72
36882--36928
25
1.9
25
86
4
69
36
8
8
46
1.65
41273--41332
30
2.0
30
93
0
102
30
21
13
35
1.92
50363--50404
15
2.8
16
82
13
54
23
4
7
64
1.38
54363--54404
21
2.0
21
100
0
84
42
19
4
33
1.72
55481--55684
109
1.9
108
80
9
236
35
10
13
40
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70821--70862
21
2.0
21
90
9
68
19
7
11
61
1.52
71828--71903
27
2.8
27
93
0
125
18
21
25
35
1.95
77643--77910
30
8.8
30
90
3
360
31
21
19
28
1.97
77678--77966
90
3.2
89
84
6
271
32
21
18
27
1.97
77930--77981
27
1.9
27
84
0
68
40
21
15
23
1.91

Tables:   1

The End!