Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024844.1 Corchorus olitorius cultivar O-4 contig24877, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8838
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:6774 original size:16 final size:17

Alignment explanation


    Indices: 6748--6779  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

       6738 AGTGCAAATT

                             
       6748 AAAATAGAAAAATAAAG
          1 AAAATAGAAAAATAAAG

                            
       6765 AAAA-AGAAAAATAAA
          1 AAAATAGAAAAATAAA

       6780 ACGCAATCTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.81, C:0.00, G:0.09, T:0.09


Consensus pattern (17 bp):   
AAAATAGAAAAATAAAG

Found at i:7012 original size:12 final size:13

Alignment explanation


    Indices: 6990--7019  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

       6980 ACTAACAATT

                         
       6990 AAAATCAATCAAG
          1 AAAATCAATCAAG

                         
       7003 AAAA-CAATCAAG
          1 AAAATCAATCAAG

                 
       7015 AAAAT
          1 AAAAT

       7020 TAAAGAAAAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13


Consensus pattern (13 bp):   
AAAATCAATCAAG
Done.