Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024847.1 Corchorus olitorius cultivar O-4 contig24880, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29462

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--137
47
2.9
47
82
12
165
45
5
18
29
1.71
1940--1990
14
3.7
13
86
7
57
45
7
9
37
1.67
4067--4332
67
4.0
67
89
1
383
38
12
22
26
1.89
4272--4513
64
3.8
64
87
1
333
35
14
22
27
1.93
4646--4826
50
3.6
49
82
3
209
30
16
18
34
1.93
4841--4948
54
2.0
54
85
0
144
28
13
22
35
1.92
4941--5263
35
9.2
35
88
4
427
31
18
21
28
1.96
4941--5263
105
3.1
104
87
4
470
31
18
21
28
1.96
7507--8401
36
25.1
35
79
8
701
46
10
17
25
1.81
7706--8187
73
6.9
64
77
15
315
45
11
18
24
1.82
7782--8300
145
3.6
145
85
6
646
47
11
17
23
1.81
7782--8264
109
4.4
108
83
6
584
47
11
17
23
1.80
7507--8300
218
3.7
218
81
8
859
46
11
17
24
1.80
11574--11610
18
2.1
18
89
0
56
37
10
5
45
1.62
12251--12291
20
2.1
19
90
4
64
58
17
7
17
1.60
12266--12312
16
3.1
15
88
11
62
61
17
8
12
1.55
17351--17394
22
2.0
22
82
4
54
22
6
9
61
1.50
19613--19663
26
1.9
26
88
11
77
37
17
5
39
1.74
21415--21488
21
3.5
21
81
3
69
25
41
20
12
1.87
29103--29462
66
5.5
65
84
5
465
38
13
22
25
1.91
29103--29462
131
2.7
129
84
5
472
38
13
22
25
1.91

Tables:   1

The End!