genome.fa.s24848.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024848.1 Corchorus olitorius cultivar O-4 contig24881, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17306

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729--1028	131	2.3	131	92	1	512	37	14	22	26	1.92
729--1028	65	4.6	65	94	0	501	37	14	22	26	1.92
1699--1734	18	2.0	18	88	0	54	47	30	13	8	1.73
3687--3924	27	8.3	26	68	18	102	19	18	5	56	1.59
3682--3855	26	6.1	28	72	14	133	18	18	5	57	1.58
3938--4164	21	11.4	21	72	20	175	20	21	5	52	1.65
3933--4291	77	4.6	78	73	14	278	21	20	4	52	1.65
4108--4297	96	2.0	96	91	2	310	22	21	4	51	1.66
4045--4228	7	26.3	7	70	16	87	20	22	3	53	1.61
4053--4294	7	34.7	7	68	14	72	21	21	4	52	1.64
4338--4387	25	2.0	25	84	7	66	28	12	14	46	1.79
4670--4708	19	2.1	18	85	4	51	48	15	7	28	1.72
6190--6250	24	2.5	24	86	5	88	55	1	19	22	1.52
6266--6402	4	37.2	4	69	12	64	68	0	6	24	1.18
6254--6412	79	2.0	83	81	8	195	68	0	6	24	1.17
6208--6467	72	3.6	72	77	12	216	65	1	8	24	1.27
6254--6429	41	4.4	40	81	10	198	68	0	6	24	1.18
6382--6445	31	2.1	31	100	0	128	65	0	9	25	1.22
6190--6281	8	12.1	8	73	11	61	60	2	13	23	1.43
6293--6429	41	3.3	41	89	3	204	68	0	8	23	1.16
6254--6473	22	9.4	23	65	21	70	68	0	6	24	1.17
8037--8682	35	17.9	35	88	5	810	42	18	12	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8647--8984	161	2.1	163	85	6	445	30	23	19	27	1.98
8646--9169	54	9.7	54	79	9	389	32	23	17	26	1.97
8972--9169	106	1.9	107	89	4	310	36	23	14	25	1.93
9083--9267	92	2.0	93	88	3	275	33	22	17	25	1.96
10382--10453	37	1.9	38	82	2	92	33	13	13	38	1.85
10633--10698	20	3.4	18	76	17	62	7	19	1	71	1.18
13745--13805	24	2.5	24	86	5	88	55	1	19	22	1.52
13787--13992	11	18.7	11	63	22	60	64	1	8	25	1.31
13817--13897	29	2.7	29	81	14	94	65	1	7	25	1.26
13745--13946	8	26.1	8	68	17	65	62	1	10	24	1.38
13848--14012	80	2.0	83	87	8	239	64	1	9	24	1.30
15261--15287	13	2.1	13	100	0	54	85	0	0	14	0.61

Tables:   1

The End!