Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024849.1 Corchorus olitorius cultivar O-4 contig24882, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12149

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1320--1429
41
2.7
41
85
2
141
28
11
9
50
1.69
1358--1440
41
2.0
41
85
0
112
30
9
10
49
1.70
3820--3908
42
2.1
42
83
10
110
24
20
12
42
1.86
5075--5135
14
4.4
14
86
10
74
37
6
18
37
1.76
7901--8289
67
5.8
66
89
1
573
37
15
22
24
1.92
7901--8289
133
2.9
133
93
0
636
37
15
22
24
1.92
7895--8445
133
4.2
134
88
2
625
37
15
22
24
1.92
7901--8503
67
9.2
66
86
5
550
37
15
22
25
1.93
8257--8547
64
4.5
64
89
1
440
35
14
23
26
1.93
8729--9050
35
9.2
35
90
2
427
31
18
20
28
1.96
10048--10125
40
2.0
39
92
5
131
20
25
6
47
1.74

Tables:   1

The End!