Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024855.1 Corchorus olitorius cultivar O-4 contig24888, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5433
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Found at i:2108 original size:29 final size:30

Alignment explanation


    Indices: 2071--2130  Score: 86
    Period size: 29  Copynumber: 2.0  Consensus size: 30

       2061 CAATTCTTCC

                *                         
       2071 TCTTGAAATAAATCTTCAA-AGTCTTCAAA
          1 TCTTCAAATAAATCTTCAAGAGTCTTCAAA

                       *                   
       2100 TCTTCAAATAAGTCTTCAATGAGTCTTCAAA
          1 TCTTCAAATAAATCTTCAA-GAGTCTTCAAA

       2131 CACGAACTTC


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
  29   17  0.63
  31   10  0.37

ACGTcount: A:0.38, C:0.18, G:0.08, T:0.35


Consensus pattern (30 bp):   
TCTTCAAATAAATCTTCAAGAGTCTTCAAA
Done.