Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024857.1 Corchorus olitorius cultivar O-4 contig24890, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39866

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--38
2
19.0
2
100
0
76
50
0
0
50
1.00
1848--1872
13
1.9
13
100
0
50
56
0
0
44
0.99
2819--2887
33
2.1
33
100
0
138
39
8
18
33
1.82
7076--7145
22
3.0
23
78
10
72
42
14
8
34
1.76
7072--7191
45
2.7
43
80
10
116
41
12
10
35
1.76
7126--7192
22
3.1
21
73
21
59
40
10
10
38
1.74
8000--8027
3
9.3
3
100
0
56
67
0
0
32
0.91
8748--8781
9
3.8
9
88
11
52
55
0
0
44
0.99
8799--8858
24
2.5
24
88
0
93
45
6
16
31
1.74
7804--9881
697
3.0
680
85
7
2783
38
11
13
35
1.82
10139--10200
27
2.3
26
76
20
65
48
1
6
43
1.38
17152--17253
6
17.0
6
100
0
204
33
0
0
66
0.92
25725--25766
21
2.0
21
86
9
59
30
9
30
28
1.89
29789--29850
21
3.0
21
97
0
115
30
14
25
29
1.95
34213--34304
21
4.4
21
93
2
150
28
18
26
27
1.98
34420--34461
21
2.0
21
90
0
66
30
16
23
28
1.96
36591--36639
25
2.0
25
100
0
98
12
32
20
34
1.90
39829--39862
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!