Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024858.1 Corchorus olitorius cultivar O-4 contig24891, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54797

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
647--692
18
2.5
19
89
6
69
28
13
41
17
1.86
4517--4542
12
2.2
12
100
0
52
7
26
7
57
1.54
5034--5084
20
2.5
20
87
0
66
19
3
54
21
1.60
19196--19429
116
2.0
116
97
0
441
31
13
18
36
1.89
21530--21559
1
30.0
1
100
0
60
100
0
0
0
0.00
24121--24150
2
15.0
2
100
0
60
0
50
0
50
1.00
25155--25244
44
2.0
45
86
2
128
27
22
23
26
1.99
25400--25483
44
1.9
44
90
0
132
29
22
21
26
1.99
25605--25649
22
2.0
22
95
0
81
35
44
6
13
1.70
25702--25726
8
3.1
8
100
0
50
64
24
0
12
1.27
31073--31322
121
2.0
128
86
7
361
38
10
2
49
1.48
39977--40022
24
1.9
24
90
0
74
30
13
8
47
1.72
42187--42272
42
2.0
42
91
4
138
48
15
17
18
1.81
45667--45693
4
6.8
4
100
0
54
0
74
0
25
0.83
47224--47260
19
1.9
19
100
0
74
45
0
10
43
1.39
47574--47600
2
13.5
2
100
0
54
48
0
0
51
1.00
48795--48852
21
2.8
21
94
5
100
27
20
25
25
1.99
52975--53016
14
2.9
14
85
3
57
42
0
23
33
1.55
54345--54419
36
2.1
36
82
2
87
32
18
16
33
1.93
54376--54619
52
4.6
52
89
4
339
27
20
13
38
1.90

Tables:   1

The End!