Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024862.1 Corchorus olitorius cultivar O-4 contig24895, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16895
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32


Found at i:14178 original size:14 final size:14

Alignment explanation


    Indices: 14159--14189  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

      14149 CCATTCTTTC

                  *       
      14159 TTTCTTTCTTTTTT
          1 TTTCTTCCTTTTTT

                          
      14173 TTTCTTCCTTTTTT
          1 TTTCTTCCTTTTTT

               
      14187 TTT
          1 TTT

      14190 AATTGGGCCT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84


Consensus pattern (14 bp):   
TTTCTTCCTTTTTT

Found at i:14178 original size:18 final size:17

Alignment explanation


    Indices: 14155--14189  Score: 52
    Period size: 18  Copynumber: 2.0  Consensus size: 17

      14145 TAACCCATTC

                  *           
      14155 TTTCTTTCTTTCTTTTTT
          1 TTTCTTCCTTT-TTTTTT

                             
      14173 TTTCTTCCTTTTTTTTT
          1 TTTCTTCCTTTTTTTTT

      14190 AATTGGGCCT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    6  0.38
  18   10  0.62

ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83


Consensus pattern (17 bp):   
TTTCTTCCTTTTTTTTT
Done.