Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024864.1 Corchorus olitorius cultivar O-4 contig24897, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3757
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1955 original size:6 final size:6

Alignment explanation


    Indices: 1944--1971  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

       1934 CACATGGTCT

                                            
       1944 AAATTC AAATTC AAATTC AAATTC AAAT
          1 AAATTC AAATTC AAATTC AAATTC AAAT

       1972 GCTAAAATAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32


Consensus pattern (6 bp):   
AAATTC

Found at i:2000 original size:6 final size:6

Alignment explanation


    Indices: 1984--2015  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

       1974 TAAAATATAT

                                                  
       1984 ATACT- ATACTA ATACTA ATACTA ATACTA ATA
          1 ATACTA ATACTA ATACTA ATACTA ATACTA ATA

       2016 TATATATATA


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    5  0.19
   6   21  0.81

ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34


Consensus pattern (6 bp):   
ATACTA

Found at i:3712 original size:16 final size:16

Alignment explanation


    Indices: 3691--3721  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       3681 TTGAAAAATA

                            
       3691 TTACTAAATCTTTATT
          1 TTACTAAATCTTTATT

                           
       3707 TTACTAAATCTTTAT
          1 TTACTAAATCTTTAT

       3722 AATTTGTAGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55


Consensus pattern (16 bp):   
TTACTAAATCTTTATT
Done.