genome.fa.s24865.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024865.1 Corchorus olitorius cultivar O-4 contig24898, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50682

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4587--4808	110	2.0	110	100	0	444	26	19	9	45	1.80
5316--5347	10	3.4	10	87	12	50	31	28	0	40	1.57
5579--5622	19	2.4	18	88	3	61	77	2	13	6	1.07
5578--5622	17	2.6	17	86	10	56	75	2	15	6	1.11
5652--5722	32	2.2	32	85	7	90	19	33	30	15	1.93
23508--23737	120	1.9	121	90	0	372	33	20	17	28	1.95
33794--33831	15	2.4	17	87	12	55	36	39	15	7	1.77
35839--36053	24	9.0	24	78	2	198	22	30	20	26	1.98
35840--36054	48	4.5	48	82	0	232	22	30	20	26	1.98
35840--36050	72	2.9	72	92	0	350	22	30	20	26	1.98
38582--38624	22	2.0	22	85	0	59	23	20	32	23	1.98
38582--38766	71	2.6	71	90	0	298	20	21	27	30	1.98
38728--38767	21	1.9	21	94	0	71	15	22	37	25	1.93
41391--41561	24	7.1	24	79	1	173	21	29	19	29	1.98
41399--41562	48	3.4	48	87	0	238	21	30	19	28	1.98
42509--42549	2	20.5	2	100	0	82	51	0	0	48	1.00
42839--42958	55	2.3	53	79	10	131	40	5	3	50	1.43
42969--43002	15	2.3	15	89	0	50	50	2	5	41	1.42
43081--43154	24	3.1	24	62	14	62	52	5	4	37	1.43
43075--43175	45	2.2	47	89	7	154	56	4	5	32	1.45
43623--43960	178	1.9	178	84	4	450	33	13	16	35	1.89
44627--44804	89	2.0	89	96	0	329	42	3	14	38	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45362--45422	30	2.0	31	93	3	106	42	6	18	32	1.76
46136--46173	15	2.8	13	82	17	51	50	0	0	50	1.00
46648--46830	22	8.2	21	79	7	159	34	9	18	37	1.83
46648--46974	44	7.1	44	70	18	195	35	9	19	35	1.83
46617--46848	44	5.2	45	76	11	185	36	8	17	37	1.80
46853--46974	22	5.5	22	75	11	115	35	9	19	35	1.85
49208--49249	20	2.1	20	86	0	57	19	19	30	30	1.96
50546--50598	25	2.1	25	92	0	88	41	16	24	16	1.89
50577--50682	33	3.4	32	77	15	123	34	19	25	19	1.96
50552--50682	60	2.2	58	90	2	199	35	19	25	19	1.95

Tables:   1

The End!