Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024869.1 Corchorus olitorius cultivar O-4 contig24902, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43853

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8649--8719
26
2.7
26
100
0
142
47
8
19
23
1.77
15527--15560
16
2.1
16
89
10
52
58
11
0
29
1.33
16750--16782
10
3.0
11
86
13
50
27
9
3
60
1.42
18288--18327
15
2.8
14
81
7
53
60
5
0
35
1.19
19276--19316
21
2.0
21
95
0
73
29
12
19
39
1.88
19286--19490
55
3.7
55
76
11
170
25
10
20
43
1.83
19421--19791
76
4.9
73
82
9
379
22
14
22
39
1.91
19754--19952
56
3.6
56
92
2
314
25
10
21
43
1.83
19920--19974
21
2.6
22
82
8
69
20
9
25
45
1.80
19966--20088
55
2.2
55
82
5
158
23
7
22
46
1.77
20138--20354
111
2.0
108
84
6
285
22
11
23
42
1.86
21873--21936
24
2.4
27
77
15
71
45
7
4
42
1.54
22356--22542
94
2.0
93
93
1
320
48
17
9
25
1.76
23005--23069
16
3.8
16
75
18
67
52
3
7
36
1.46
28532--28597
30
2.2
30
94
0
114
24
31
18
25
1.97
28607--28678
36
2.0
36
100
0
144
30
27
8
33
1.86
30792--30844
17
3.2
16
79
15
56
32
1
18
47
1.60
30688--30835
76
1.9
76
97
0
278
39
3
16
39
1.66
32394--32504
56
2.0
56
94
0
195
40
9
9
39
1.72
32597--32631
18
2.0
17
88
5
52
40
2
2
54
1.30
34846--34924
7
10.9
7
78
15
63
77
0
3
18
0.92
34846--34952
12
9.5
12
77
12
86
73
0
2
23
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34867--34952
6
14.2
6
83
6
93
70
0
3
25
1.02
35541--35629
46
1.9
47
88
2
135
37
13
12
37
1.82
38747--38789
2
21.5
2
100
0
86
48
0
0
51
1.00

Tables:   1

The End!