Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024871.1 Corchorus olitorius cultivar O-4 contig24904, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  181923

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2229--2258
14
2.1
14
93
0
51
0
30
0
70
0.88
9339--9384
2
24.0
2
82
8
60
45
0
0
54
0.99
30241--30296
29
1.9
29
92
0
94
16
19
30
33
1.94
43640--43726
45
1.9
45
95
0
156
19
35
16
28
1.93
46924--46978
21
2.8
20
83
5
67
36
10
21
30
1.88
47012--47039
14
2.0
14
100
0
56
21
28
21
28
1.99
46934--47148
107
2.0
107
99
0
421
31
17
22
28
1.97
47119--47146
14
2.0
14
100
0
56
21
28
21
28
1.99
49409--49541
53
2.5
54
86
4
191
51
14
16
18
1.77
54831--54865
16
2.1
17
89
5
54
11
2
17
68
1.31
59542--59684
76
1.9
76
80
8
166
16
27
30
25
1.97
65657--65705
21
2.3
21
82
6
55
14
28
16
40
1.87
74966--75043
29
2.7
29
87
2
111
15
24
19
41
1.90
75151--75226
29
2.6
29
87
2
98
40
14
25
19
1.89
76689--76721
15
2.3
15
89
5
50
48
0
3
48
1.17
76774--76939
86
1.9
88
87
3
246
35
9
13
41
1.77
83951--83975
13
1.9
13
100
0
50
56
0
8
36
1.29
84497--84522
1
26.0
1
100
0
52
100
0
0
0
0.00
86431--86477
11
4.7
10
80
17
53
40
6
21
31
1.78
86442--86477
19
1.9
18
88
5
54
41
2
22
33
1.68
91242--91321
34
2.4
34
97
0
151
35
18
13
32
1.90
106752--106828
31
2.5
31
77
8
84
33
10
18
37
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106932--107000
29
2.3
29
80
5
75
33
11
15
39
1.84
107484--107531
25
1.9
25
100
0
96
29
16
12
41
1.85
107679--107746
33
2.1
33
94
0
118
23
32
11
32
1.91
119390--119468
36
2.3
33
87
8
113
50
11
7
30
1.66
122677--122747
30
2.4
31
95
4
121
26
21
14
38
1.91
126986--127056
30
2.4
31
95
4
121
26
21
14
38
1.91
146031--146069
2
19.5
2
100
0
78
51
48
0
0
1.00
146803--146832
1
30.0
1
100
0
60
100
0
0
0
0.00
147192--147252
32
1.9
32
90
6
97
26
18
6
49
1.71
148904--148935
15
2.1
15
94
0
55
53
6
12
28
1.62
149172--149205
17
2.0
17
100
0
68
23
11
0
64
1.26
150069--150098
14
2.2
14
94
5
53
20
20
6
53
1.67
151828--151860
2
16.5
2
100
0
66
48
0
0
51
1.00
166081--166208
45
2.9
45
97
1
240
33
7
22
36
1.81
170310--170365
27
2.1
27
86
0
76
26
5
26
41
1.77
171183--171247
31
2.1
31
100
0
130
44
6
9
40
1.61
171716--171759
21
2.1
21
86
0
61
34
18
20
27
1.96
175267--175313
23
2.0
24
87
4
69
25
10
27
36
1.89
177670--177997
50
6.6
50
93
0
559
24
28
11
36
1.90

Tables:   1

The End!