Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024877.1 Corchorus olitorius cultivar O-4 contig24910, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4502
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36


Found at i:3426 original size:6 final size:6

Alignment explanation


    Indices: 3414--3447  Score: 50
    Period size: 6  Copynumber: 5.7  Consensus size: 6

       3404 TAAAATACTA

                     *                      *      
       3414 TTATCT TTGTCT TTATCT TTATCT TTATTT TTAT
          1 TTATCT TTATCT TTATCT TTATCT TTATCT TTAT

       3448 ACTCTATGAT


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.15, C:0.12, G:0.03, T:0.71


Consensus pattern (6 bp):   
TTATCT

Done.