Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024878.1 Corchorus olitorius cultivar O-4 contig24911, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44662

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4133--4239
54
2.0
52
92
3
178
46
14
6
32
1.69
6054--6191
31
4.5
31
82
0
159
33
24
22
19
1.97
17689--17717
10
2.7
11
89
10
51
0
17
0
82
0.66
17701--17746
16
2.9
15
78
9
56
2
23
0
73
0.94
17689--17729
21
2.0
21
85
0
55
0
21
0
78
0.76
17684--17735
21
2.4
21
74
3
50
0
26
0
73
0.84
18788--18828
21
2.0
20
85
4
55
41
4
43
9
1.59
21505--21583
18
4.4
18
90
0
122
6
15
41
36
1.72
27308--27351
2
21.5
2
90
4
70
45
0
2
52
1.13
28803--28846
21
2.1
21
91
0
70
34
13
9
43
1.76
32544--32597
21
2.7
19
85
5
72
29
22
11
37
1.89
35571--35725
65
2.5
64
83
9
169
30
30
21
17
1.96
35609--35736
62
2.0
62
95
4
229
31
29
18
20
1.96
35773--35811
19
2.1
19
100
0
78
15
38
20
25
1.92
39917--39968
20
2.6
20
96
0
95
30
25
26
17
1.97
43228--43270
21
2.0
21
82
8
52
53
9
2
34
1.46
43733--43757
8
3.1
8
100
0
50
12
0
12
76
1.04

Tables:   1

The End!