Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024884.1 Corchorus olitorius cultivar O-4 contig24917, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49900

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3137--3183
25
1.9
25
91
4
78
12
42
38
6
1.69
4509--4565
12
4.8
11
73
14
51
35
3
10
50
1.54
9507--9547
21
2.0
21
85
9
57
41
12
4
41
1.64
9738--9790
27
2.0
27
85
7
72
26
7
18
47
1.75
11228--11283
28
2.0
29
86
10
80
30
23
16
30
1.96
11730--12001
134
2.0
132
94
2
337
43
9
11
35
1.75
13694--13742
21
2.3
21
92
0
80
30
20
28
20
1.98
14825--14902
28
2.8
29
80
5
79
38
10
15
35
1.81
15665--15733
18
3.7
19
76
16
72
4
26
0
69
1.07
16143--16174
2
16.0
2
100
0
64
50
0
0
50
1.00
33528--33574
22
2.1
22
84
7
60
61
2
12
23
1.42
33467--33635
93
1.8
93
97
0
320
53
1
11
33
1.48
33673--33731
30
1.9
31
86
3
84
40
3
22
33
1.70
34253--34311
31
1.9
31
89
0
91
35
8
18
37
1.81
34381--34405
2
12.5
2
100
0
50
52
0
0
48
1.00
39552--39587
15
2.3
16
90
4
56
22
0
2
75
0.94
40086--40131
20
2.3
20
85
11
67
2
15
4
78
1.01
40087--40133
21
2.3
20
85
10
60
2
17
2
78
0.94
40337--40367
13
2.3
14
94
5
55
48
0
3
48
1.17
43880--43988
33
3.5
34
73
20
119
34
30
14
20
1.92
44490--44528
2
20.5
2
89
10
64
48
0
0
51
1.00
44490--44528
19
2.1
19
100
0
78
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46629--46654
2
13.0
2
100
0
52
50
0
50
0
1.00
48586--48628
2
21.5
2
100
0
86
51
0
0
48
1.00

Tables:   1

The End!