Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024887.1 Corchorus olitorius cultivar O-4 contig24920, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33054

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
132--171
21
1.9
21
94
0
71
25
37
22
15
1.93
124--314
71
2.7
71
90
1
294
32
26
22
18
1.97
204--245
21
2.0
21
95
0
75
23
35
19
21
1.96
5139--5213
21
3.8
21
79
13
95
30
13
17
38
1.88
5175--5208
17
2.0
17
94
0
59
29
14
23
32
1.94
5306--5513
21
9.9
21
84
2
274
34
25
13
26
1.93
5306--5517
42
5.0
42
93
2
372
33
25
13
27
1.94
9410--9460
23
2.2
23
82
6
59
60
11
0
27
1.31
9410--9460
24
2.2
23
82
3
57
60
11
0
27
1.31
11016--11064
3
16.3
3
100
0
98
67
0
0
32
0.91
17897--17955
24
2.5
24
100
0
118
11
32
35
20
1.89
18992--19034
10
4.3
10
75
0
50
58
23
2
16
1.50
21311--21360
26
1.9
26
83
0
64
58
2
6
34
1.34
21600--21673
33
2.2
33
92
0
121
14
44
33
6
1.72
23116--23155
3
13.7
3
86
5
55
32
0
0
67
0.91
31429--31491
32
2.0
32
100
0
126
36
6
25
31
1.81
31628--31881
103
2.4
101
83
11
316
41
9
9
39
1.70
31939--32003
31
2.2
31
88
5
98
49
10
16
23
1.77
32122--32201
30
2.6
31
82
2
99
35
16
8
40
1.79
32882--32953
29
2.4
29
97
2
135
52
11
13
22
1.72
32905--33015
31
3.6
31
79
4
118
42
11
14
31
1.82

Tables:   1

The End!