Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024891.1 Corchorus olitorius cultivar O-4 contig24924, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1306
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38


Found at i:1229 original size:58 final size:58

Alignment explanation


    Indices: 1124--1238  Score: 162
    Period size: 58  Copynumber: 2.0  Consensus size: 58

       1114 ATAGCATCAT

                      *                                               
       1124 GCCTCGGTCCTAAAACGTCTTTTTTAGACATCTAATAAAAAAACATGTCACTCGATAA
          1 GCCTCGGTCCGAAAACGTCTTTTTTAGACATCTAATAAAAAAACATGTCACTCGATAA

                                                      * *         *    
       1182 GCCTCGGTCCGAAAACGTCTTTTTTTATG-CATCTAAT-AAAGACCATGTCACTTGATA
          1 GCCTCGGTCCGAAAACGTC-TTTTTTA-GACATCTAATAAAAAAACATGTCACTCGATA

       1239 TTTAATTAAT


Statistics
Matches: 51,  Mismatches: 4, Indels: 4
        0.86            0.07        0.07

Matches are distributed among these distances:
  58   35  0.69
  59   15  0.29
  60    1  0.02

ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31


Consensus pattern (58 bp):   
GCCTCGGTCCGAAAACGTCTTTTTTAGACATCTAATAAAAAAACATGTCACTCGATAA
Done.