Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024892.1 Corchorus olitorius cultivar O-4 contig24925, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41642

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2582--2616
17
2.1
16
89
5
52
28
8
0
62
1.24
4876--4909
2
17.5
2
87
6
52
47
2
0
50
1.16
5126--5206
39
2.0
40
92
2
137
50
8
3
37
1.51
5197--5242
24
2.0
23
91
4
74
32
6
6
54
1.52
6237--6306
36
1.9
36
91
0
113
60
8
10
21
1.55
8244--8274
10
3.2
10
95
4
55
0
6
0
93
0.35
9529--9789
106
2.5
104
92
2
416
40
8
9
41
1.68
10573--10619
1
47.0
1
100
0
94
0
0
0
100
0.00
11066--11102
2
18.5
2
100
0
74
51
0
0
48
1.00
12747--12800
26
2.1
26
96
0
99
27
7
14
50
1.70
13318--13412
41
2.3
41
88
0
145
34
16
16
31
1.92
16589--16685
48
2.0
48
100
0
194
36
16
20
26
1.94
18060--18090
11
2.8
11
90
0
53
32
9
22
35
1.87
19313--19357
18
2.5
18
74
0
54
46
6
2
44
1.42
22723--22748
2
13.0
2
100
0
52
50
0
0
50
1.00
23801--23915
27
4.3
27
81
6
117
20
12
39
28
1.88
27759--28019
106
2.5
105
86
3
339
41
9
8
40
1.67
36159--36240
33
2.5
33
97
0
155
23
10
50
15
1.76
38295--38336
10
4.1
10
84
6
57
19
0
21
59
1.38
38297--38339
20
2.1
20
91
4
68
20
0
16
62
1.32

Tables:   1

The End!