Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024894.1 Corchorus olitorius cultivar O-4 contig24927, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3629
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33


Found at i:146 original size:36 final size:36

Alignment explanation


    Indices: 92--161  Score: 104
    Period size: 36  Copynumber: 1.9  Consensus size: 36

         82 GAGATTTTGG

                         *      *               
         92 AGAAATATAATAATCAAAATTACAAAAAATGTAATA
          1 AGAAATATAATAACCAAAATCACAAAAAATGTAATA

                    *                  *      
        128 AGAAATATGATAACCAAAATCACAAAAGATGTAA
          1 AGAAATATAATAACCAAAATCACAAAAAATGTAA

        162 GGTTATTGAA


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  36   30  1.00

ACGTcount: A:0.61, C:0.09, G:0.09, T:0.21


Consensus pattern (36 bp):   
AGAAATATAATAACCAAAATCACAAAAAATGTAATA
Done.