Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024895.1 Corchorus olitorius cultivar O-4 contig24928, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20585

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2266--2328
15
4.0
15
78
11
72
17
14
28
39
1.89
2261--2327
33
2.0
33
94
0
116
19
13
29
37
1.90
2250--2312
18
3.7
18
77
12
69
20
17
25
36
1.94
2395--2479
27
3.1
27
94
0
143
18
20
42
18
1.90
3923--3993
25
2.8
25
95
0
124
19
21
29
29
1.98
10131--10218
46
1.9
46
97
0
167
25
4
25
45
1.72
11260--11288
1
29.0
1
100
0
58
0
0
0
100
0.00
14206--14268
29
2.2
29
94
0
108
58
9
6
25
1.53
16737--16788
21
2.4
21
84
9
61
67
15
1
15
1.32
17123--17170
6
7.7
6
84
9
60
83
14
0
2
0.74
17137--17163
14
1.9
14
100
0
54
81
14
0
3
0.82
17123--17170
20
2.5
19
87
9
71
83
14
0
2
0.74
17936--18388
22
20.3
22
70
13
129
35
12
18
33
1.88
17936--18060
44
2.8
44
87
0
169
40
14
13
31
1.85
18193--18388
88
2.2
89
78
7
211
31
11
18
37
1.87
18193--18414
44
5.0
43
72
11
162
31
11
18
38
1.86
18193--18415
22
10.1
21
73
11
126
31
11
18
38
1.87
20281--20332
22
2.4
22
76
0
59
38
11
15
34
1.83
20412--20493
22
3.7
22
75
14
71
39
8
19
32
1.82

Tables:   1

The End!