Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002490.1 Corchorus olitorius cultivar O-4 contig02490, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2671
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25


Found at i:55 original size:19 final size:19

Alignment explanation


    Indices: 14--57  Score: 52
    Period size: 19  Copynumber: 2.3  Consensus size: 19

          4 CCTTTTTGTT

                              *
         14 ATTTTATTCATCGCATTCG
          1 ATTTTATTCATCGCATTCA

                       ** *    
         33 ATTTTATTCATTTCGTTCA
          1 ATTTTATTCATCGCATTCA

                  
         52 ATTTTA
          1 ATTTTA

         58 GTTATCTCAT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.23, C:0.16, G:0.07, T:0.55


Consensus pattern (19 bp):   
ATTTTATTCATCGCATTCA
Done.