Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024903.1 Corchorus olitorius cultivar O-4 contig24936, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97206

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1701--1734
17
2.0
17
100
0
68
47
23
11
17
1.81
2146--2188
19
2.3
19
84
11
54
74
11
11
2
1.17
6113--6276
82
2.0
82
98
0
319
47
16
19
16
1.83
9044--9115
31
2.3
31
75
17
78
26
4
8
61
1.43
9948--9973
13
2.0
13
100
0
52
30
0
7
61
1.24
10112--10162
23
2.2
23
82
6
59
27
49
21
1
1.60
10152--10242
16
5.7
16
79
10
105
38
40
14
6
1.72
10152--10241
32
2.8
32
87
0
144
37
41
14
6
1.72
10645--10669
12
2.1
12
100
0
50
60
0
24
16
1.36
15313--15337
12
2.1
12
100
0
50
60
0
24
16
1.36
15639--15671
15
2.1
16
94
5
59
42
0
0
57
0.98
27317--27413
47
2.1
46
98
1
185
20
18
10
50
1.76
30303--30444
63
2.3
63
97
0
266
29
30
14
26
1.95
30601--30647
17
2.7
17
86
3
58
36
2
2
59
1.21
30560--30717
79
2.1
75
88
7
228
34
7
6
51
1.55
32416--32490
28
2.7
27
89
4
116
64
5
6
24
1.39
32484--32564
35
2.2
38
84
13
132
55
14
8
20
1.66
32491--32561
35
2.0
35
97
0
133
54
14
9
21
1.68
32792--32930
56
2.5
55
81
5
136
23
10
22
43
1.85
32959--33095
53
2.6
52
89
4
202
24
8
23
43
1.80
33104--33437
74
4.5
73
89
3
497
19
12
23
43
1.86
33252--33307
21
2.6
22
80
8
62
16
14
25
44
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34439--34515
31
2.6
30
86
8
104
20
14
6
58
1.58
35632--35661
1
30.0
1
100
0
60
100
0
0
0
0.00
38426--38461
18
2.0
18
94
0
63
63
0
11
25
1.27
39128--39171
16
2.8
16
89
0
70
36
40
15
6
1.74
39175--39204
11
2.6
11
94
5
51
23
50
26
0
1.50
39645--39716
31
2.3
31
75
17
78
26
4
8
61
1.43
40003--40047
6
7.8
6
85
9
58
22
51
26
0
1.49
40004--40047
22
2.0
23
90
4
72
22
50
27
0
1.50
40037--40143
16
6.8
16
74
14
105
36
39
15
8
1.78
40037--40143
32
3.4
32
87
3
146
36
39
15
8
1.78
41359--41400
22
1.9
22
85
9
59
52
14
26
7
1.67
41358--41406
22
2.2
22
78
7
55
57
14
22
6
1.59
48672--48779
54
2.0
54
83
7
139
34
25
1
38
1.67
54551--54603
18
2.8
18
77
8
52
16
1
3
77
1.01
54706--54774
29
2.3
29
80
5
75
39
8
13
39
1.75
61057--61973
355
2.6
352
90
3
1435
41
12
9
36
1.75
62753--62785
6
5.7
6
89
7
50
45
0
15
39
1.46
70319--70393
30
2.5
30
91
0
114
18
5
46
29
1.71
81930--82066
68
2.0
68
92
0
229
19
8
27
43
1.80
84164--84552
194
2.0
194
93
0
670
39
22
11
26
1.88
85956--86121
86
1.9
86
79
8
185
34
10
12
42
1.77
87242--87302
31
2.0
31
83
6
79
55
9
18
16
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88890--88937
11
4.7
11
78
21
52
33
20
6
39
1.78
90170--90232
33
1.9
33
100
0
126
39
9
14
36
1.78
93842--94094
22
11.6
22
71
15
141
37
9
15
36
1.81
93872--94002
45
3.0
44
82
8
140
34
11
17
36
1.86
93842--94085
44
5.6
45
74
12
170
37
10
14
37
1.81
93970--94014
19
2.2
20
84
11
56
51
6
13
28
1.66
94055--94102
22
2.2
22
81
7
53
47
8
18
25
1.76

Tables:   1

The End!