Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024916.1 Corchorus olitorius cultivar O-4 contig24949, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47596

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5406--5430
7
3.6
7
100
0
50
88
0
12
0
0.53
5823--7035
322
3.7
318
77
10
1125
35
16
14
33
1.89
7150--7767
323
1.9
325
82
6
770
35
15
14
34
1.88
6360--7775
731
2.0
715
89
4
2162
35
16
14
33
1.89
7273--8325
558
1.9
545
82
6
1312
36
16
13
33
1.88
7075--9793
890
3.1
872
87
4
3904
36
15
14
33
1.88
8712--9533
322
2.5
322
82
5
963
34
15
15
34
1.89
10440--11233
323
2.4
321
84
6
951
34
15
15
33
1.90
9789--12109
877
2.6
875
88
4
3311
36
15
14
34
1.88
11283--12755
647
2.3
643
89
3
2203
34
16
14
34
1.89
11301--12755
321
4.5
322
81
6
1661
34
16
14
34
1.89
12278--13309
554
1.9
543
82
5
1306
36
16
14
33
1.89
14249--14274
8
3.2
8
100
0
52
50
0
23
26
1.50
14862--14905
21
2.1
21
100
0
88
27
20
0
52
1.47
14894--14933
12
3.1
13
89
7
55
0
17
0
82
0.67
14898--14929
15
2.1
16
94
5
57
0
15
0
84
0.63
25527--25693
60
2.8
60
83
8
173
37
13
14
34
1.85
25742--25897
57
2.7
60
87
7
230
27
19
17
34
1.95

Tables:   1

The End!