Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024918.1 Corchorus olitorius cultivar O-4 contig24951, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35822

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5031--5085
13
4.4
13
80
15
62
61
7
0
30
1.23
6177--6202
2
13.0
2
100
0
52
50
0
0
50
1.00
6240--6291
24
2.2
24
82
0
59
42
19
3
34
1.69
8997--9027
15
2.1
15
100
0
62
6
61
0
32
1.21
9690--9732
19
2.3
19
83
0
59
88
0
11
0
0.52
9689--9732
10
4.5
10
82
5
54
88
0
11
0
0.51
9688--9732
9
5.1
9
89
7
58
88
0
11
0
0.50
9688--9739
16
3.3
16
84
7
54
86
0
13
0
0.57
9718--9803
43
2.0
44
82
11
106
50
10
25
13
1.74
13259--13335
29
2.6
30
85
8
104
42
16
23
16
1.88
13391--13430
18
2.2
18
90
0
62
30
20
12
37
1.89
14066--14111
20
2.3
20
81
3
58
47
2
6
43
1.41
22922--22946
2
12.5
2
100
0
50
48
0
0
52
1.00
26364--26401
11
3.5
11
85
10
51
57
2
0
39
1.12
29254--29338
43
2.0
43
95
0
152
35
8
23
32
1.85
34330--34462
35
3.8
35
82
4
160
39
18
15
27
1.90

Tables:   1

The End!